The nearest airport is ZNZ - Zanzibar, located 54.7 km south of Mkwajuni.
Other airports nearby include TGT - Tanga (75.3 km north), PMA - Pemba (77.4 km north east), DAR - Dar Es Salaam Mwalimu Julius K Nyerere Intl (127.1 km south), MBA - Mombasa Moi Intl (190.6 km north),