The nearest airport is JJI - Juanjui, located 34.0 km west of San Juan.
Other airports nearby include TPP - Tarapoto Cadete Guillermo Del Castillo Paredes (61.2 km north), YMS - Yurimaguas Moises Benzaquen Rengifo (133.6 km north), CHH - Chachapoyas (182.8 km north west), PCL - Pucallpa Cap Fap David Abenzur Rengifo Intl (252.5 km south east),